These are my 61 academic publications.
You can see who's citing them on
Google Scholar or
Semantic Scholar.
Filter by publication topic.
Cantera ChemKED GPUs Monte Carlo ODEs atmospheric chemistry biogeochemistry chemical kinetics computational fluid dynamics diffusion direct numerical simulation domain decomposition exascale experimental measurements feedstock to function finite element analysis integrators linear algebra live fuels machine learning manufacturing model reduction neutron transport nuclear reactors numerical methods ocean parameter databases reduction algorithms smoldering sustainable aviation fuels swept rule turbulence turbulent flames vacuum arc remelting vectorization wildfire
2024
Joanna Morgan, Ilham Variansyah, Samuel Pasmann, Kayla B. Clements, Braxton Cuneo, Alexander Mote, Charles Goodman, Caleb Shaw, Jordan Northrop, Rohan Pankaj, Ethan Lame, Benjamin Whewell, Ryan McClarren, Todd S. Palmer, Lizhong Chen, Dmitriy Anistratov, C. T. Kelley, Camille Palmer, Kyle E. Niemeyer (2024) Monte Carlo / Dynamic Code (MC/DC): An accelerated Python package for fully transient neutron transport and rapid methods development Journal of Open Source Software
Introduces MC/DC, a Python-based software package for modeling transient (i.e., time-dependent) neutron transport that performs well on exascale-class high-performance computing systems. 2023— Sabbatical (Winter/Spring); ended AAAS Fellowship in December; returned to Corvallis and began AHUG position
2022— Sabbatical (Fall); began AAAS STP Fellowship in DC @ DOE
2021— COVID-19; began as ME Undergraduate Program Coordinator
2020— Promoted to Associate Professor and received tenure; COVID-19
2019
Rolf Sander, Andreas Baumgaertner, David Cabrera-Perez, Franziska Frank, Sergey Gromov, Jens-Uwe Grooß, Hartwig Harder, Vincent Huijnen, Patrick Jöckel, Vlassis A. Karydis, Kyle E. Niemeyer, Andrea Pozzer, Hella Riede, Martin G. Schultz, Domenico Taraborrelli, Sebastian Tauer (2019) The community atmospheric chemistry box model CAABA/MECCA-4.0 Geoscientific Model Development
Presents an updated version of a model for atmospheric chemistry, including the capability of reducing the model using a method adapted from the combustion literature. 2018
Arfon M. Smith, Kyle E. Niemeyer, Daniel S. Katz, Lorena A. Barba, George Githinji, Melissa Gymrek, Kathryn D. Huff, Christopher R. Madan, Abigail Cabunoc Mayes, Kevin M. Moerman, Pjotr Prins, Karthik Ram, Ariel Rokem, Tracy K. Teal, Roman Valls Guimera, Jacob T. Vanderplas (2018) Journal of Open Source Software (JOSS): design and first-year review PeerJ Computer Science
Describes the motivation, design, and progress of the Journal of Open Source Software (JOSS), which is a free and open-access journal that publishes articles describing research software. Daniel S. Katz, Kyle E. Niemeyer, Sandra Gesing, Lorraine Hwang, Wolfgang Bangerth, Simon Hettrick, Ray Idaszak, Jean Salac, Neil Chue Hong, Santiago Núñez-Corrales, Alice Allen, R. Stuart Geiger, Jonah Miller, Emily Chen, Anshu Dubey, Patricia Lago (2018) Fourth Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE4) Journal of Open Research Software
Records and discusses the Fourth Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE4). Daniel S. Katz, Gabrielle Allen, Lorena A. Barba, Devin R. Berg, Holly Bik, Carl Boettiger, Christine L. Borgman, C. Titus Brown, Stuart Buck, Randy Burd, Anita de Waard, Martin Paul Eve, Brian E. Granger, Josh Greenberg, Adina Howe, Bill Howe, May Khanna, Timothy L. Killeen, Matthew Mayernik, Erin McKiernan, Chris Mentzel, Nirav Merchant, Kyle E. Niemeyer, Laura Noren, Sarah M. Nusser, Daniel A. Reed, Edward Seidel, MacKenzie Smith, Jeffrey R. Spies, Matt Turk, John D. Van Horn, Jay Walsh (2018) The principles of tomorrow's university F1000Research
Discusses and summarizes the activities of a workshop on imagining the university of tomorrow, focused on open scholarly research. 2017
Jonathan P. Tennant, Jonathan M. Dugan, Daniel Graziotin, Damien C. Jacques, François Waldner, Daniel Mietchen, Yehia Elkhatib, Lauren B. Collister, Christina K. Pikas, Tom Crick, Paola Masuzzo, Anthony Caravaggi, Devin R. Berg, Kyle E. Niemeyer, Tony Ross-Hellauer, Sara Mannheimer, Lillian Rigling, Daniel S. Katz, Bastian Greshake Tzovaras, Josmel Pacheco-Mendoza, Nazeefa Fatima, Marta Poblet, Marios Isaakidis, Dasapta Erwin Irawan, Sébastien Renaut, Christopher R. Madan, Lisa Matthias, Jesper Nørgaard Kjær, Daniel Paul O'Donnell, Cameron Neylon, Sarah Kearns, Manojkumar Selvaraju, Julien Colomb (2017) A multi-disciplinary perspective on emergent and future innovations in peer review F1000 Research
Examines models for peer review across the systems of scholarly communication, and proposes potential new models that resolve technical and social issues inherent to the status quo. 2016
Arfon M Smith, Daniel S Katz, Kyle E. Niemeyer, FORCE11 Software Citation Working Group (2016) Software Citation Principles PeerJ Computer Science
Presents a consolidated set of principles for citing software in scholarly studies, to encourage broad adoption of a consistent policy for software citation across disciplines and venues. Daniel S. Katz, Sou-Cheng T. Choi, Kyle E. Niemeyer, James Hetherington, Frank Löffler, Dan Gunter, Ray Idaszak, Steven R. Brandt, Mark A. Miller, Sandra Gesing, Nick D. Jones, Nic Weber, Suresh Marru, Gabrielle Allen, Birgit Penzenstadler, Colin C. Venters, Ethan Davis, Lorraine Hwang, Ilian Todorov, Abani Patra, Miguel de Val-Borro (2016) Report on the Third Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE3) Journal of Open Research Software
Records and discusses the Third Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE3). 2015— Started tenure-track position
2014— Shifted to research faculty position
2011
2010— Defended MS thesis; began PhD work
2009— Graduated from BS; 1st year of MS
Craig R. Slyfield, Kyle E. Niemeyer, EV Tkachenko, Ryan E Tomlinson, Grant G Steyer, CG Patthanacharoenphon, GJ Kazakia, David L Wilson, Christopher J Hernandez (2009) Three-dimensional surface texture visualization of bone tissue through epifluorescence-based serial block face imaging Journal of Microscopy
Developed a method to visualize the surfaces of bones, and create three-dimensional models, by processing high-resolution images taken as microscopic surfaces were ground away.