These are my 65 academic publications.
You can see who's citing them on Google Scholar or Semantic Scholar.
Filter by publication topic.
CanteraChemKEDGPUsMonte CarloODEsatmospheric chemistrybiogeochemistrychemical kineticscomputational fluid dynamicsdiffusiondirect numerical simulationdomain decompositionexascaleexperimental measurementsfeedstock to functionfinite element analysisintegratorslinear algebralive fuelsmachine learningmanufacturingmodel reductionneutron transportnuclear reactorsnumerical methodsoceanparameter databasesreduction algorithmssmolderingsustainable aviation fuelsswept ruleturbulenceturbulent flamesvacuum arc remeltingvectorizationwildfire
2025
2024
Joanna P. Morgan, Ilham Variansyah, Samuel Pasmann, Kayla B. Clements, Braxton Cuneo, Alexander Mote, Charles Goodman, Caleb Shaw, Jordan Northrop, Rohan Pankaj, Ethan Lame, Benjamin Whewell, Ryan McClarren, Todd S. Palmer, Lizhong Chen, Dmitriy Anistratov, C. T. Kelley, Camille Palmer, Kyle E. Niemeyer (2024) Monte Carlo / Dynamic Code (MC/DC): An accelerated Python package for fully transient neutron transport and rapid methods development Journal of Open Source Software
Introduces MC/DC, a Python-based software package for modeling transient (i.e., time-dependent) neutron transport that performs well on exascale-class high-performance computing systems. 2023β Sabbatical (Winter/Spring); ended AAAS Fellowship in December; returned to Corvallis and began AHUG position
2022β Sabbatical (Fall); began AAAS STP Fellowship in DC @ DOE
2021β COVID-19; began as ME Undergraduate Program Coordinator
2020β Promoted to Associate Professor and received tenure; COVID-19
2019
Rolf Sander, Andreas Baumgaertner, David Cabrera-Perez, Franziska Frank, Sergey Gromov, Jens-Uwe GrooΓ, Hartwig Harder, Vincent Huijnen, Patrick JΓΆckel, Vlassis A. Karydis, Kyle E. Niemeyer, Andrea Pozzer, Hella Riede, Martin G. Schultz, Domenico Taraborrelli, Sebastian Tauer (2019) The community atmospheric chemistry box model CAABA/MECCA-4.0 Geoscientific Model Development
Presents an updated version of a model for atmospheric chemistry, including the capability of reducing the model using a method adapted from the combustion literature. 2018
Arfon M. Smith, Kyle E. Niemeyer, Daniel S. Katz, Lorena A. Barba, George Githinji, Melissa Gymrek, Kathryn D. Huff, Christopher R. Madan, Abigail Cabunoc Mayes, Kevin M. Moerman, Pjotr Prins, Karthik Ram, Ariel Rokem, Tracy K. Teal, Roman Valls Guimera, Jacob T. Vanderplas (2018) Journal of Open Source Software (JOSS): design and first-year review PeerJ Computer Science
Describes the motivation, design, and progress of the Journal of Open Source Software (JOSS), which is a free and open-access journal that publishes articles describing research software. Daniel S. Katz, Kyle E. Niemeyer, Sandra Gesing, Lorraine Hwang, Wolfgang Bangerth, Simon Hettrick, Ray Idaszak, Jean Salac, Neil Chue Hong, Santiago NΓΊΓ±ez-Corrales, Alice Allen, R. Stuart Geiger, Jonah Miller, Emily Chen, Anshu Dubey, Patricia Lago (2018) Fourth Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE4) Journal of Open Research Software
Records and discusses the Fourth Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE4). Daniel S. Katz, Gabrielle Allen, Lorena A. Barba, Devin R. Berg, Holly Bik, Carl Boettiger, Christine L. Borgman, C. Titus Brown, Stuart Buck, Randy Burd, Anita de Waard, Martin Paul Eve, Brian E. Granger, Josh Greenberg, Adina Howe, Bill Howe, May Khanna, Timothy L. Killeen, Matthew Mayernik, Erin McKiernan, Chris Mentzel, Nirav Merchant, Kyle E. Niemeyer, Laura Noren, Sarah M. Nusser, Daniel A. Reed, Edward Seidel, MacKenzie Smith, Jeffrey R. Spies, Matt Turk, John D. Van Horn, Jay Walsh (2018) The principles of tomorrow's university F1000Research
Discusses and summarizes the activities of a workshop on imagining the university of tomorrow, focused on open scholarly research. 2017
Jonathan P. Tennant, Jonathan M. Dugan, Daniel Graziotin, Damien C. Jacques, François Waldner, Daniel Mietchen, Yehia Elkhatib, Lauren B. Collister, Christina K. Pikas, Tom Crick, Paola Masuzzo, Anthony Caravaggi, Devin R. Berg, Kyle E. Niemeyer, Tony Ross-Hellauer, Sara Mannheimer, Lillian Rigling, Daniel S. Katz, Bastian Greshake Tzovaras, Josmel Pacheco-Mendoza, Nazeefa Fatima, Marta Poblet, Marios Isaakidis, Dasapta Erwin Irawan, Sébastien Renaut, Christopher R. Madan, Lisa Matthias, Jesper Nørgaard Kjær, Daniel Paul O'Donnell, Cameron Neylon, Sarah Kearns, Manojkumar Selvaraju, Julien Colomb (2017) A multi-disciplinary perspective on emergent and future innovations in peer review F1000 Research
Examines models for peer review across the systems of scholarly communication, and proposes potential new models that resolve technical and social issues inherent to the status quo. 2016
Arfon M Smith, Daniel S Katz, Kyle E. Niemeyer, FORCE11 Software Citation Working Group (2016) Software Citation Principles PeerJ Computer Science
Presents a consolidated set of principles for citing software in scholarly studies, to encourage broad adoption of a consistent policy for software citation across disciplines and venues. Daniel S. Katz, Sou-Cheng T. Choi, Kyle E. Niemeyer, James Hetherington, Frank LΓΆffler, Dan Gunter, Ray Idaszak, Steven R. Brandt, Mark A. Miller, Sandra Gesing, Nick D. Jones, Nic Weber, Suresh Marru, Gabrielle Allen, Birgit Penzenstadler, Colin C. Venters, Ethan Davis, Lorraine Hwang, Ilian Todorov, Abani Patra, Miguel de Val-Borro (2016) Report on the Third Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE3) Journal of Open Research Software
Records and discusses the Third Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE3). 2015β Started tenure-track position
2014β Shifted to research faculty position
2011
2010β Defended MS thesis; began PhD work
2009β Graduated from BS; 1st year of MS
Craig R. Slyfield, Kyle E. Niemeyer, EV Tkachenko, Ryan E Tomlinson, Grant G Steyer, CG Patthanacharoenphon, GJ Kazakia, David L Wilson, Christopher J Hernandez (2009) Three-dimensional surface texture visualization of bone tissue through epifluorescence-based serial block face imaging Journal of Microscopy
Developed a method to visualize the surfaces of bones, and create three-dimensional models, by processing high-resolution images taken as microscopic surfaces were ground away.
Last updated 8/23/2025. To the extent
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